List of biomedical cybernetics software

The following is a list of software packages and applications for biocybernetics research.

Data formats and specifications

• Systems Biology Markup Language
• BioPAX
• CellML
• MIASE
• MIRIAM
• Systems Biology Ontology (SBO)
• Systems Biology Graphical Notation (SBGN)

Applications

• Cell Designer: A structured diagram editor for drawing gene-regulatory and biochemical networks.
• cyberneticbacteria: Artificial life simulation.
• SimThyr: A simulator for thyrotropic feedback control.
• SPINA-Thyr: Software for calculating GT and GD in thyroid homeostasis.
• Systems Biology Workbench: A software framework for integration of different simulation tools.
• tkCybernetics: Grafical tool for rapidly setting up simulations of simple cybernetic systems.
• Virtual Cell

Other Collections

• PhysioToolkit Software Index: PhysioNet's software collection